STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IA57_05580Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)    
Predicted Functional Partners:
lolD
Lipoprotein ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 0.987
IA57_01655
Transmembrane permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.959
IA57_03050
Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.942
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.814
IA57_02955
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.746
IA57_04670
Cell envelope biogenesis protein LolA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.743
IA57_11155
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.743
IA57_06605
Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.607
IA57_05590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.593
IA57_07300
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.592
Your Current Organism:
Mangrovimonas yunxiaonensis
NCBI taxonomy Id: 1197477
Other names: CGMCC 1.12280, LMG 27142, LMG:27142, M. yunxiaonensis, Mangrovimonas yunxiaonensis Li et al. 2013 emend. Hameed et al. 2015, Meridianimaribacter sp. LY, strain LY01, strain LYYY01
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