STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IA57_06980Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)    
Predicted Functional Partners:
IA57_06975
Mrp; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
     
 0.823
IA57_06425
[Fe-S]-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.
  
 
 0.731
IA57_06505
Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.693
IA57_00180
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.675
IA57_06985
ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.639
IA57_11595
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.637
trmB
tRNA (guanine-N7)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.571
IA57_06970
Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.571
IA57_06990
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.548
IA57_06965
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.543
Your Current Organism:
Mangrovimonas yunxiaonensis
NCBI taxonomy Id: 1197477
Other names: CGMCC 1.12280, LMG 27142, LMG:27142, M. yunxiaonensis, Mangrovimonas yunxiaonensis Li et al. 2013 emend. Hameed et al. 2015, Meridianimaribacter sp. LY, strain LY01, strain LYYY01
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