STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IA57_08235TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1058 aa)    
Predicted Functional Partners:
IA57_08230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.962
IA57_11350
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.682
IA57_08225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.680
IA57_09000
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.649
IA57_08220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.589
IA57_04745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.570
IA57_06800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.552
IA57_00575
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.521
IA57_08240
Surface antigen (D15); Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.504
IA57_08215
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.451
Your Current Organism:
Mangrovimonas yunxiaonensis
NCBI taxonomy Id: 1197477
Other names: CGMCC 1.12280, LMG 27142, LMG:27142, M. yunxiaonensis, Mangrovimonas yunxiaonensis Li et al. 2013 emend. Hameed et al. 2015, Meridianimaribacter sp. LY, strain LY01, strain LYYY01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.