STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IA57_09125valyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (88 aa)    
Predicted Functional Partners:
IA57_05570
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.866
IA57_09140
Lactate utilization protein B/C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.862
IA57_02100
Phenylacetic acid degradation protein PaaN; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.835
IA57_09130
Phosphatidylserine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.814
IA57_09135
Phosphatidate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.804
IA57_01190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
IA57_00165
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
IA57_08585
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.735
IA57_01495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
IA57_01110
acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.717
Your Current Organism:
Mangrovimonas yunxiaonensis
NCBI taxonomy Id: 1197477
Other names: CGMCC 1.12280, LMG 27142, LMG:27142, M. yunxiaonensis, Mangrovimonas yunxiaonensis Li et al. 2013 emend. Hameed et al. 2015, Meridianimaribacter sp. LY, strain LY01, strain LYYY01
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