STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IA57_09590OsmC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)    
Predicted Functional Partners:
IA57_09600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.804
IA57_09585
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
IA57_09595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.759
bshC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BshC family.
       0.580
IA57_09575
Glutamate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
IA57_02075
Tungsten formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.483
IA57_10715
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.483
IA57_11985
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.483
Your Current Organism:
Mangrovimonas yunxiaonensis
NCBI taxonomy Id: 1197477
Other names: CGMCC 1.12280, LMG 27142, LMG:27142, M. yunxiaonensis, Mangrovimonas yunxiaonensis Li et al. 2013 emend. Hameed et al. 2015, Meridianimaribacter sp. LY, strain LY01, strain LYYY01
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