STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IA57_09750Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (353 aa)    
Predicted Functional Partners:
IA57_09895
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.872
IA57_09755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.862
IA57_09760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.811
IA57_09745
Polysialic; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.809
IA57_05320
dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.718
IA57_07510
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.707
IA57_07480
UDP-N-acetylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.613
IA57_07855
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.591
IA57_00340
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.530
IA57_01725
WxcM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.526
Your Current Organism:
Mangrovimonas yunxiaonensis
NCBI taxonomy Id: 1197477
Other names: CGMCC 1.12280, LMG 27142, LMG:27142, M. yunxiaonensis, Mangrovimonas yunxiaonensis Li et al. 2013 emend. Hameed et al. 2015, Meridianimaribacter sp. LY, strain LY01, strain LYYY01
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