STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000299315_02152Unannotated protein. (171 aa)    
Predicted Functional Partners:
GCA_000299315_00195
Unannotated protein.
   
 
 0.810
GCA_000299315_02151
Unannotated protein.
    
  0.611
GCA_000299315_02118
Unannotated protein.
  
  
 0.552
GCA_000299315_02119
Unannotated protein.
  
  
 0.552
GCA_000299315_01902
Unannotated protein.
    
  0.487
GCA_000299315_02901
Unannotated protein.
  
 
  0.465
GCA_000299315_02149
Unannotated protein.
       0.420
GCA_000299315_02150
Unannotated protein.
       0.420
GCA_000299315_01328
Unannotated protein.
   
 
  0.417
GCA_000299315_03527
Unannotated protein.
  
 
  0.407
Your Current Organism:
Microbacterium barkeri
NCBI taxonomy Id: 1197720
Other names: M. barkeri 2011-R4, Microbacterium barkeri 2011-R4, Microbacterium barkeri str. 2011-R4, Microbacterium barkeri strain 2011-R4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.