NEOLI_002188 protein (Neolecta irregularis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NEOLI_002188

Mitochondrial escape protein 2. (604 aa)

Predicted Functional Partners:

NEOLI_002139

0.710

NEOLI_001729

0.692

NEOLI_000314

0.679

NEOLI_002255

0.677

NEOLI_004469

0.677

NEOLI_004401

0.669

NEOLI_002696

0.669

NEOLI_002974

0.669

NEOLI_003111

0.663

NEOLI_001699

0.650

Your Current Organism:

Neolecta irregularis

NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEOLI_000314	NEOLI_002139	A0A1U7LUB1	A0A1U7LGI4	SWM histone demethylase complex subunit phf1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.658
NEOLI_000314	NEOLI_002188	A0A1U7LUB1	A0A1U7LGX4	SWM histone demethylase complex subunit phf1.	Mitochondrial escape protein 2.	0.679
NEOLI_000314	NEOLI_002255	A0A1U7LUB1	A0A1U7LHC2	SWM histone demethylase complex subunit phf1.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.641
NEOLI_000314	NEOLI_002696	A0A1U7LUB1	A0A1U7LMG8	SWM histone demethylase complex subunit phf1.	Putative oxidoreductase.	0.684
NEOLI_000314	NEOLI_002974	A0A1U7LUB1	A0A1U7LRU8	SWM histone demethylase complex subunit phf1.	DNA-directed RNA polymerase II subunit RPB3.	0.675
NEOLI_000314	NEOLI_004401	A0A1U7LUB1	A0A1U7LHJ1	SWM histone demethylase complex subunit phf1.	PWWP domain-containing protein2.	0.684
NEOLI_000314	NEOLI_004469	A0A1U7LUB1	A0A1U7LKT4	SWM histone demethylase complex subunit phf1.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.656
NEOLI_001699	NEOLI_002188	A0A1U7LGQ6	A0A1U7LGX4	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Mitochondrial escape protein 2.	0.650
NEOLI_001729	NEOLI_002188	A0A1U7LPA6	A0A1U7LGX4	Mitochondrial inner membrane i-AAA protease supercomplex subunit YME1.	Mitochondrial escape protein 2.	0.692
NEOLI_001729	NEOLI_002974	A0A1U7LPA6	A0A1U7LRU8	Mitochondrial inner membrane i-AAA protease supercomplex subunit YME1.	DNA-directed RNA polymerase II subunit RPB3.	0.406
NEOLI_002139	NEOLI_000314	A0A1U7LGI4	A0A1U7LUB1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	SWM histone demethylase complex subunit phf1.	0.658
NEOLI_002139	NEOLI_002188	A0A1U7LGI4	A0A1U7LGX4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Mitochondrial escape protein 2.	0.710
NEOLI_002139	NEOLI_002255	A0A1U7LGI4	A0A1U7LHC2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
NEOLI_002139	NEOLI_002696	A0A1U7LGI4	A0A1U7LMG8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative oxidoreductase.	0.860
NEOLI_002139	NEOLI_002974	A0A1U7LGI4	A0A1U7LRU8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.999
NEOLI_002139	NEOLI_003111	A0A1U7LGI4	A0A1U7LRA0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit rpb4.	0.995
NEOLI_002139	NEOLI_004401	A0A1U7LGI4	A0A1U7LHJ1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	PWWP domain-containing protein2.	0.860
NEOLI_002139	NEOLI_004469	A0A1U7LGI4	A0A1U7LKT4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.997
NEOLI_002188	NEOLI_000314	A0A1U7LGX4	A0A1U7LUB1	Mitochondrial escape protein 2.	SWM histone demethylase complex subunit phf1.	0.679
NEOLI_002188	NEOLI_001699	A0A1U7LGX4	A0A1U7LGQ6	Mitochondrial escape protein 2.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.650