NEOLI_004520 protein (Neolecta irregularis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NEOLI_004520

CID domain-containing protein. (276 aa)

Predicted Functional Partners:

NEOLI_002942

0.999

NEOLI_003403

0.999

NEOLI_003537

0.999

NEOLI_003484

0.999

NEOLI_002847

0.999

NEOLI_000666

0.999

NEOLI_005151

0.998

NEOLI_002554

0.998

NEOLI_004363

0.998

NEOLI_002935

0.998

Your Current Organism:

Neolecta irregularis

NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEOLI_000666	NEOLI_002554	A0A1U7LTD8	A0A1U7LJ47	Spliceosome-associated protein 49.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.955
NEOLI_000666	NEOLI_002847	A0A1U7LTD8	A0A1U7LQA0	Spliceosome-associated protein 49.	Splicing factor 3B subunit 2.	0.996
NEOLI_000666	NEOLI_002935	A0A1U7LTD8	A0A1U7LS01	Spliceosome-associated protein 49.	Small nuclear ribonucleoprotein G.	0.964
NEOLI_000666	NEOLI_002942	A0A1U7LTD8	A0A1U7LNS8	Spliceosome-associated protein 49.	U2 snRNP-associated SURP motif-containing protein.	0.718
NEOLI_000666	NEOLI_003403	A0A1U7LTD8	A0A1U7LNU5	Spliceosome-associated protein 49.	U2 snRNP component prp10.	0.995
NEOLI_000666	NEOLI_003484	A0A1U7LTD8	A0A1U7LPU5	Spliceosome-associated protein 49.	Pre-mRNA-splicing factor sap62.	0.993
NEOLI_000666	NEOLI_003537	A0A1U7LTD8	A0A1U7LNV7	Spliceosome-associated protein 49.	DNA-damage-repair/toleration protein.	0.725
NEOLI_000666	NEOLI_004363	A0A1U7LTD8	A0A1U7LLA9	Spliceosome-associated protein 49.	Small nuclear ribonucleoprotein Sm D2.	0.964
NEOLI_000666	NEOLI_004520	A0A1U7LTD8	A0A1U7LHM5	Spliceosome-associated protein 49.	CID domain-containing protein.	0.999
NEOLI_000666	NEOLI_005151	A0A1U7LTD8	A0A1U7LIM6	Spliceosome-associated protein 49.	Pre-mRNA-splicing factor sap61.	0.990
NEOLI_002554	NEOLI_000666	A0A1U7LJ47	A0A1U7LTD8	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Spliceosome-associated protein 49.	0.955
NEOLI_002554	NEOLI_002847	A0A1U7LJ47	A0A1U7LQA0	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Splicing factor 3B subunit 2.	0.986
NEOLI_002554	NEOLI_002935	A0A1U7LJ47	A0A1U7LS01	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
NEOLI_002554	NEOLI_002942	A0A1U7LJ47	A0A1U7LNS8	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	U2 snRNP-associated SURP motif-containing protein.	0.764
NEOLI_002554	NEOLI_003403	A0A1U7LJ47	A0A1U7LNU5	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	U2 snRNP component prp10.	0.971
NEOLI_002554	NEOLI_003484	A0A1U7LJ47	A0A1U7LPU5	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Pre-mRNA-splicing factor sap62.	0.982
NEOLI_002554	NEOLI_003537	A0A1U7LJ47	A0A1U7LNV7	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	DNA-damage-repair/toleration protein.	0.670
NEOLI_002554	NEOLI_004363	A0A1U7LJ47	A0A1U7LLA9	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
NEOLI_002554	NEOLI_004520	A0A1U7LJ47	A0A1U7LHM5	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	CID domain-containing protein.	0.998
NEOLI_002554	NEOLI_005151	A0A1U7LJ47	A0A1U7LIM6	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Pre-mRNA-splicing factor sap61.	0.989