STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEOLI_001824Ribosomal large subunit pseudouridine synthase D. (219 aa)    
Predicted Functional Partners:
NEOLI_001364
tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 
 0.909
NEOLI_002515
Uncharacterized protein.
  
 
 0.885
NEOLI_004850
54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.879
NEOLI_001555
Putative GTP-binding protein EngB.
   
 
 0.877
NEOLI_003309
Mitochondrial GTPase 1; Mitochondrial GTPase involved in assembly of the large ribosomal subunit. Plays a role in expression of the mitochondrial translational machinery; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
   
 
 0.876
NEOLI_003649
60S ribosomal protein L23-B; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.876
NEOLI_001688
54S ribosomal protein L4, mitochondrial.
    
 
 0.872
NEOLI_002999
60S ribosomal protein L26-2.
   
   0.870
NEOLI_002215
54S ribosomal protein L23, mitochondrial.
  
   0.869
NEOLI_000200
54S ribosomal protein L9, mitochondrial.
  
 
 0.867
Your Current Organism:
Neolecta irregularis
NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3
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