STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEOLI_003537DNA-damage-repair/toleration protein. (477 aa)    
Predicted Functional Partners:
NEOLI_004520
CID domain-containing protein.
   
 0.999
NEOLI_003896
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase prp43.
 
 
 0.990
NEOLI_002942
U2 snRNP-associated SURP motif-containing protein.
   
 0.981
NEOLI_003403
U2 snRNP component prp10.
   
 0.961
NEOLI_003484
Pre-mRNA-splicing factor sap62.
    
 0.945
NEOLI_002484
U2 small nuclear ribonucleoprotein A.
   
 0.941
NEOLI_005151
Pre-mRNA-splicing factor sap61.
   
 0.918
NEOLI_004355
U1 small nuclear ribonucleoprotein usp102.
   
 0.907
NEOLI_002904
Pre-mRNA-splicing factor sap114.
   
 0.904
NEOLI_002847
Splicing factor 3B subunit 2.
   
 0.878
Your Current Organism:
Neolecta irregularis
NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.