STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEOLI_004512Single-stranded DNA-binding protein RIM1, mitochondrial. (133 aa)    
Predicted Functional Partners:
NEOLI_004194
37S ribosomal protein MRP17, mitochondrial.
  
  
 0.944
NEOLI_000586
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
 
 0.904
NEOLI_001373
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
  
 0.798
NEOLI_002550
40S ribosomal protein S20.
   
 
 0.792
NEOLI_004216
37S ribosomal protein S10, mitochondrial.
   
 
 0.783
NEOLI_000567
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
    0.737
NEOLI_003105
60S acidic ribosomal protein P0.
   
    0.737
NEOLI_003572
37S ribosomal protein S7, mitochondrial.
  
   0.719
NEOLI_003203
40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
  
   0.719
NEOLI_002110
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
  
 
 0.701
Your Current Organism:
Neolecta irregularis
NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.