NEOLI_003677 protein (Neolecta irregularis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NEOLI_003677

Putative 26S proteasome regulatory subunit rpn7. (389 aa)

Predicted Functional Partners:

NEOLI_000453

0.999

NEOLI_004046

0.999

NEOLI_002780

0.999

NEOLI_004498

0.999

NEOLI_004186

0.999

NEOLI_001276

0.999

NEOLI_000728

0.999

NEOLI_000468

0.998

NEOLI_003516

0.998

NEOLI_002952

0.998

Your Current Organism:

Neolecta irregularis

NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEOLI_000453	NEOLI_000468	A0A1U7LGR4	A0A1U7LGT3	Putative 26S proteasome regulatory subunit rpn9.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.996
NEOLI_000453	NEOLI_000728	A0A1U7LGR4	A0A1U7LW93	Putative 26S proteasome regulatory subunit rpn9.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.997
NEOLI_000453	NEOLI_001276	A0A1U7LGR4	A0A1U7LV97	Putative 26S proteasome regulatory subunit rpn9.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
NEOLI_000453	NEOLI_002780	A0A1U7LGR4	A0A1U7LNX8	Putative 26S proteasome regulatory subunit rpn9.	26S proteasome regulatory subunit rpn11.	0.999
NEOLI_000453	NEOLI_002952	A0A1U7LGR4	A0A1U7LPW8	Putative 26S proteasome regulatory subunit rpn9.	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	0.994
NEOLI_000453	NEOLI_003516	A0A1U7LGR4	A0A1U7LHT6	Putative 26S proteasome regulatory subunit rpn9.	Putative 26S proteasome regulatory subunit rpn3.	0.998
NEOLI_000453	NEOLI_003677	A0A1U7LGR4	A0A1U7LQ04	Putative 26S proteasome regulatory subunit rpn9.	Putative 26S proteasome regulatory subunit rpn7.	0.999
NEOLI_000453	NEOLI_004046	A0A1U7LGR4	A0A1U7LI90	Putative 26S proteasome regulatory subunit rpn9.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.997
NEOLI_000453	NEOLI_004186	A0A1U7LGR4	A0A1U7LTM7	Putative 26S proteasome regulatory subunit rpn9.	26S proteasome regulatory subunit rpn-8.	0.998
NEOLI_000453	NEOLI_004498	A0A1U7LGR4	A0A1U7LRF9	Putative 26S proteasome regulatory subunit rpn9.	26S proteasome regulatory subunit rpn5.	0.998
NEOLI_000468	NEOLI_000453	A0A1U7LGT3	A0A1U7LGR4	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	Putative 26S proteasome regulatory subunit rpn9.	0.996
NEOLI_000468	NEOLI_000728	A0A1U7LGT3	A0A1U7LW93	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.998
NEOLI_000468	NEOLI_001276	A0A1U7LGT3	A0A1U7LV97	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
NEOLI_000468	NEOLI_002780	A0A1U7LGT3	A0A1U7LNX8	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit rpn11.	0.998
NEOLI_000468	NEOLI_002952	A0A1U7LGT3	A0A1U7LPW8	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	Putative 26S protease subunit rpt4; Belongs to the AAA ATPase family.	0.998
NEOLI_000468	NEOLI_003516	A0A1U7LGT3	A0A1U7LHT6	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	Putative 26S proteasome regulatory subunit rpn3.	0.979
NEOLI_000468	NEOLI_003677	A0A1U7LGT3	A0A1U7LQ04	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	Putative 26S proteasome regulatory subunit rpn7.	0.998
NEOLI_000468	NEOLI_004046	A0A1U7LGT3	A0A1U7LI90	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.998
NEOLI_000468	NEOLI_004186	A0A1U7LGT3	A0A1U7LTM7	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit rpn-8.	0.998
NEOLI_000468	NEOLI_004498	A0A1U7LGT3	A0A1U7LRF9	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit rpn5.	0.998