STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEOLI_003245COPII coat assembly protein sec16. (437 aa)    
Predicted Functional Partners:
NEOLI_000348
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.991
NEOLI_002627
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.979
NEOLI_004085
Uncharacterized protein.
   
 0.975
NEOLI_003440
Protein transport protein sec24.
   
 0.975
NEOLI_004157
Uncharacterized protein.
   
 0.946
NEOLI_004768
Small COPII coat GTPase SAR1; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.923
NEOLI_001434
Protein transport protein SEC31.
   
 0.906
NEOLI_001435
Protein transport protein SEC31.
   
 0.906
NEOLI_002389
Uncharacterized protein.
   
 0.829
NEOLI_000584
Integral membrane protein sed5.
   
 
 0.747
Your Current Organism:
Neolecta irregularis
NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.