STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEOLI_002074U4/U6.U5 small nuclear ribonucleoprotein. (173 aa)    
Predicted Functional Partners:
NEOLI_001155
Putative mRNA-splicing protein ubp10.
   
 0.963
NEOLI_003979
Pre-mRNA-splicing factor cwf17.
   
  0.929
NEOLI_002123
U4/U6.U5 tri-snRNP-associated protein snu66.
    
 0.904
NEOLI_002430
U4/U5/U6 small nuclear ribonucleoprotein prp3.
   
 0.895
NEOLI_002935
Small nuclear ribonucleoprotein G.
   
 0.887
NEOLI_004363
Small nuclear ribonucleoprotein Sm D2.
   
  0.879
NEOLI_003961
Small nuclear ribonucleoprotein Sm D3.
   
 0.870
NEOLI_001197
U6 snRNA-associated Sm-like protein LSm6.
   
  0.869
NEOLI_000791
Small nuclear ribonucleoprotein F.
   
  0.863
NEOLI_001396
ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.
   
 0.860
Your Current Organism:
Neolecta irregularis
NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3
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