STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEOLI_002019Zinc finger CCHC domain-containing protein 9. (201 aa)    
Predicted Functional Partners:
NEOLI_000910
Ribosomal RNA-processing protein 15.
   
   0.745
NEOLI_000215
ATP-dependent RNA helicase mtr4.
   
 
 0.732
NEOLI_003282
RNA exonuclease 4.
   
   0.677
NEOLI_001917
Nucleolar protein 12.
   
 
 0.632
NEOLI_002272
Non-canonical poly(A) RNA polymerase PAPD5.
   
 
 0.618
NEOLI_002540
Poly(A) RNA polymerase cid14.
   
 
 0.618
NEOLI_002048
Putative RNA-binding protein.
    
 
 0.607
NEOLI_001449
54S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family.
   
  0.590
NEOLI_004220
Elongation factor 3.
    
   0.554
NEOLI_005242
U3 small nucleolar ribonucleoprotein imp3.
   
 
 0.516
Your Current Organism:
Neolecta irregularis
NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.