NEOLI_003961 protein (Neolecta irregularis) - STRING interaction network

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Predicted Interactions

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NEOLI_003961

Small nuclear ribonucleoprotein Sm D3. (412 aa)

Predicted Functional Partners:

NEOLI_002554

0.999

NEOLI_004363

0.999

NEOLI_002935

0.999

NEOLI_000791

0.998

NEOLI_001016

0.996

NEOLI_004520

0.993

NEOLI_000571

0.993

NEOLI_003956

0.993

NEOLI_004355

0.992

NEOLI_003689

0.992

Your Current Organism:

Neolecta irregularis

NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEOLI_000571	NEOLI_000791	A0A1U7LKH0	A0A1U7LWT3	U1 small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein F.	0.989
NEOLI_000571	NEOLI_001016	A0A1U7LKH0	A0A1U7LW86	U1 small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein-associated protein B.	0.990
NEOLI_000571	NEOLI_002554	A0A1U7LKH0	A0A1U7LJ47	U1 small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.992
NEOLI_000571	NEOLI_002935	A0A1U7LKH0	A0A1U7LS01	U1 small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein G.	0.991
NEOLI_000571	NEOLI_003689	A0A1U7LKH0	A0A1U7LQA5	U1 small nuclear ribonucleoprotein.	Pre-mRNA-splicing factor prp1.	0.757
NEOLI_000571	NEOLI_003956	A0A1U7LKH0	A0A1U7LNK3	U1 small nuclear ribonucleoprotein.	U1 small nuclear ribonucleoprotein C.	0.993
NEOLI_000571	NEOLI_003961	A0A1U7LKH0	A0A1U7LVH1	U1 small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein Sm D3.	0.993
NEOLI_000571	NEOLI_004355	A0A1U7LKH0	A0A1U7LMG5	U1 small nuclear ribonucleoprotein.	U1 small nuclear ribonucleoprotein usp102.	0.982
NEOLI_000571	NEOLI_004363	A0A1U7LKH0	A0A1U7LLA9	U1 small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein Sm D2.	0.994
NEOLI_000571	NEOLI_004520	A0A1U7LKH0	A0A1U7LHM5	U1 small nuclear ribonucleoprotein.	CID domain-containing protein.	0.909
NEOLI_000791	NEOLI_000571	A0A1U7LWT3	A0A1U7LKH0	Small nuclear ribonucleoprotein F.	U1 small nuclear ribonucleoprotein.	0.989
NEOLI_000791	NEOLI_001016	A0A1U7LWT3	A0A1U7LW86	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein-associated protein B.	0.996
NEOLI_000791	NEOLI_002554	A0A1U7LWT3	A0A1U7LJ47	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
NEOLI_000791	NEOLI_002935	A0A1U7LWT3	A0A1U7LS01	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein G.	0.999
NEOLI_000791	NEOLI_003689	A0A1U7LWT3	A0A1U7LQA5	Small nuclear ribonucleoprotein F.	Pre-mRNA-splicing factor prp1.	0.994
NEOLI_000791	NEOLI_003956	A0A1U7LWT3	A0A1U7LNK3	Small nuclear ribonucleoprotein F.	U1 small nuclear ribonucleoprotein C.	0.987
NEOLI_000791	NEOLI_003961	A0A1U7LWT3	A0A1U7LVH1	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein Sm D3.	0.998
NEOLI_000791	NEOLI_004355	A0A1U7LWT3	A0A1U7LMG5	Small nuclear ribonucleoprotein F.	U1 small nuclear ribonucleoprotein usp102.	0.992
NEOLI_000791	NEOLI_004363	A0A1U7LWT3	A0A1U7LLA9	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein Sm D2.	0.999
NEOLI_000791	NEOLI_004520	A0A1U7LWT3	A0A1U7LHM5	Small nuclear ribonucleoprotein F.	CID domain-containing protein.	0.997

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Network Stats

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Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:2001295

malonyl-CoA biosynthetic process

2 of 3

2.29

1.15

0.0073

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003700

DNA-binding transcription factor activity

7 of 89

1.36

1.73

3.18e-06

GO:0016743

Carboxyl- or carbamoyltransferase activity

2 of 4

2.17

0.79

0.0348

GO:0003989

acetyl-CoA carboxylase activity

2 of 4

2.17

0.79

0.0348

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009317

acetyl-CoA carboxylase complex

2 of 3

2.29

1.3

0.0038

GO:0005737

Cytoplasm

11 of 1119

0.46

0.38

0.00095

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2244

Mixed, incl. The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain that has a similar fold to PUBMED:12757941. It is believed to modulate activity of bacterial transcription factors in response to binding small molecules., and Peroxiredoxin activity

4 of 6

2.29

2.56

1.08e-05

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map01210

2-Oxocarboxylic acid metabolism

4 of 22

1.73

1.76

0.00012

map00300

Lysine biosynthesis

4 of 24

1.69

1.73

0.00012

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009317

acetyl-CoA carboxylase complex

2 of 4

2.17

0.75

0.0419

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0805

Transcription regulation

7 of 113

1.26

1.52

4.72e-06

KW-0238

DNA-binding

7 of 190

1.04

4.98e-05

KW-0275

Fatty acid biosynthesis

2 of 11

1.73

0.71

0.0408

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01039

Carboxyl transferase domain

2 of 2

2.47

0.83

0.0302

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00345

Helix_turn_helix gluconate operon transcriptional repressor

7 of 12

2.23

5.3

2.51e-12

SM00866

The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain that has a similar fold to PUBMED:12757941. It is believed to modulate activity of bacterial transcription factors in response to binding small molecules.

4 of 5

2.37

3.23

5.11e-07

SM00895

This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding ...

2 of 3

2.29

1.29

0.0040

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