STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEOLI_000332Protein BRE4. (544 aa)    
Predicted Functional Partners:
NEOLI_003561
Uncharacterized protein.
    
 
 0.871
NEOLI_001017
SAGA complex subunit spt3.
    
 
 0.869
NEOLI_004270
Transcription initiation factor TFIID subunit 9.
   
 
 0.864
NEOLI_002651
Transcriptional adapter 2.
    
 
 0.795
NEOLI_003143
Splicing factor subunit; Belongs to the SF3B5 family.
    
   0.794
TRM8
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
    
 
 0.788
NEOLI_002821
SAGA-associated factor 29.
    
 
 0.788
NEOLI_002820
Uncharacterized protein.
    
 
 0.788
NEOLI_003163
Ubiquitin carboxyl-terminal hydrolase 2.
    
   0.780
NEOLI_003061
Transcription initiation factor TFIID subunit 6.
    
 
 0.727
Your Current Organism:
Neolecta irregularis
NCBI taxonomy Id: 1198029
Other names: N. irregularis DAH-3, Neolecta irregularis DAH-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.