STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR87024.1Transcriptional regulator, XRE family with cupin sensor. (198 aa)    
Predicted Functional Partners:
SIR87014.1
Methyltransferase domain-containing protein.
 
   
 0.851
SIR59124.1
Thioredoxin reductase.
 
     0.540
SIQ64385.1
Helix-turn-helix.
  
     0.508
SIQ43790.1
Transcriptional regulator, XRE family with cupin sensor.
  
    0.492
SIQ17491.1
TIGR03083 family protein.
  
   0.426
SIS03355.1
TIGR03083 family protein.
  
   0.426
SIR87001.1
Drug resistance transporter, EmrB/QacA subfamily.
       0.419
Your Current Organism:
Micromonospora avicenniae
NCBI taxonomy Id: 1198245
Other names: CCTCC AA 2012010, DSM 45758, M. avicenniae, Micromonospora avicenniae Li et al. 2013, Micromonospora sp. 2685R06, strain 268506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.