STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR89650.1Carbohydrate binding domain-containing protein. (1020 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.787
SIR86577.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.770
SIR73178.1
Hypothetical protein.
  
     0.758
SIR73193.1
Glycosyl hydrolases family 43.
     0.750
SIS02517.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
    0.735
SIQ92762.1
Zinc carboxypeptidase.
  
     0.724
SIR83986.1
TAT (twin-arginine translocation) pathway signal sequence; Belongs to the glycosyl hydrolase 28 family.
 
 
  0.719
SIR86538.1
Lamin Tail Domain.
  
 
  0.718
SIR84003.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
 
  0.715
SIR53566.1
Xylan 1,4-beta-xylosidase.
  
  
  0.712
Your Current Organism:
Micromonospora avicenniae
NCBI taxonomy Id: 1198245
Other names: CCTCC AA 2012010, DSM 45758, M. avicenniae, Micromonospora avicenniae Li et al. 2013, Micromonospora sp. 2685R06, strain 268506
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