STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR96985.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
SIR96999.1
Hypothetical protein.
       0.773
SIR97012.1
Excreted virulence factor EspC, type VII ESX diderm.
       0.773
SIR97025.1
YbaB/EbfC DNA-binding family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
       0.773
SIR96959.1
NTP pyrophosphatase, house-cleaning of non-canonical NTPs.
       0.464
Your Current Organism:
Micromonospora avicenniae
NCBI taxonomy Id: 1198245
Other names: CCTCC AA 2012010, DSM 45758, M. avicenniae, Micromonospora avicenniae Li et al. 2013, Micromonospora sp. 2685R06, strain 268506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.