STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA75892.1cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (219 aa)    
Predicted Functional Partners:
SDA76948.1
RNA polymerase, alpha chain C terminal domain.
   
 0.998
SDA49044.1
Adenylate cyclase.
  
 0.985
SDA44444.1
Signal transduction histidine kinase.
   
 0.892
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.882
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.881
SDA69596.1
Tetratricopeptide repeat-containing protein.
   
 0.874
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.857
SDA43477.1
Tetratricopeptide repeat-containing protein.
   
 0.846
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.829
SDA39262.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.817
Your Current Organism:
Lachnospiraceae bacterium G11
NCBI taxonomy Id: 1200747
Other names: L. bacterium G11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.