Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDJ79981.1 | SDJ80012.1 | SAMN04487760_11626 | SAMN04487760_11627 | Oxygen-independent coproporphyrinogen-3 oxidase. | Hypothetical protein. | 0.621 |
SDJ79981.1 | SDJ80039.1 | SAMN04487760_11626 | SAMN04487760_11628 | Oxygen-independent coproporphyrinogen-3 oxidase. | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | 0.403 |
SDJ79981.1 | deoC | SAMN04487760_11626 | SAMN04487760_11624 | Oxygen-independent coproporphyrinogen-3 oxidase. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.531 |
SDJ79981.1 | lysA | SAMN04487760_11626 | SAMN04487760_11625 | Oxygen-independent coproporphyrinogen-3 oxidase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.524 |
SDJ80012.1 | SDJ79981.1 | SAMN04487760_11627 | SAMN04487760_11626 | Hypothetical protein. | Oxygen-independent coproporphyrinogen-3 oxidase. | 0.621 |
SDJ80012.1 | SDJ80039.1 | SAMN04487760_11627 | SAMN04487760_11628 | Hypothetical protein. | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | 0.495 |
SDJ80012.1 | deoC | SAMN04487760_11627 | SAMN04487760_11624 | Hypothetical protein. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.426 |
SDJ80012.1 | lysA | SAMN04487760_11627 | SAMN04487760_11625 | Hypothetical protein. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.429 |
SDJ80039.1 | SDJ79981.1 | SAMN04487760_11628 | SAMN04487760_11626 | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | Oxygen-independent coproporphyrinogen-3 oxidase. | 0.403 |
SDJ80039.1 | SDJ80012.1 | SAMN04487760_11628 | SAMN04487760_11627 | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | Hypothetical protein. | 0.495 |
deoC | SDJ79981.1 | SAMN04487760_11624 | SAMN04487760_11626 | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | Oxygen-independent coproporphyrinogen-3 oxidase. | 0.531 |
deoC | SDJ80012.1 | SAMN04487760_11624 | SAMN04487760_11627 | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | Hypothetical protein. | 0.426 |
deoC | lysA | SAMN04487760_11624 | SAMN04487760_11625 | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.812 |
lysA | SDJ79981.1 | SAMN04487760_11625 | SAMN04487760_11626 | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | Oxygen-independent coproporphyrinogen-3 oxidase. | 0.524 |
lysA | SDJ80012.1 | SAMN04487760_11625 | SAMN04487760_11627 | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | Hypothetical protein. | 0.429 |
lysA | deoC | SAMN04487760_11625 | SAMN04487760_11624 | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.812 |