STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
purDPhosphoribosylamine--glycine ligase. (399 aa)    
Predicted Functional Partners:
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
   0.934
carB
Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
 
 0.891
M900_0051
Methyltransferase domain protein.
   
 0.888
M900_0628
Putative phosphate acetyltransferase.
  
 0.866
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.861
EQC48074.1
Fumarate hydratase I, C-terminal domain, beta subunit.
    
 0.854
M900_2624
biotin-(acetyl-CoA-carboxylase) ligase.
  
 0.851
EQC44254.1
enoyl-CoA hydratase/isomerase family protein.
    
 0.848
M900_0054
Glycosyltransferase family 28 C-terminal domain protein.
 
     0.844
pseI
Pseudaminic acid synthase.
     
 0.833
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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