STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_0693ABC transporter, ATP-binding protein. (218 aa)    
Predicted Functional Partners:
M900_0692
MacB-like periplasmic core domain protein.
  
 0.994
EQC44347.1
Hypothetical protein.
  
 0.977
M900_0364
ABC transporter, ATP-binding protein.
 
   0.883
M900_0336
PF07044 domain protein.
   
 
 0.870
M900_2615
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.870
M900_1999
PF11827 family protein.
  
 
 0.821
M900_2014
PF11827 family protein.
  
 
 0.821
M900_2016
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.821
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
    
 0.805
M900_1296
Hypothetical protein.
  
 
 0.783
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.