STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_0810TRAP transporter, DctM subunit. (420 aa)    
Predicted Functional Partners:
M900_0809
TRAP transporter, DctQ-like membrane protein.
 
 0.998
M900_0808
ABC transporter, substrate-binding protein, family 7.
  
 0.974
M900_0807
Putative lipoprotein.
     
 0.774
EQC44405.1
Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase.
    
 0.749
M900_0811
Hypothetical protein.
       0.727
M900_1138
HMGL-like protein.
 
  
  0.640
M900_0628
Putative phosphate acetyltransferase.
    
  0.629
purD
Phosphoribosylamine--glycine ligase.
     
 0.606
fabD
[acyl-carrier-protein] S-malonyltransferase.
  
 
 0.589
M900_1418
MaoC-like protein.
     
 0.579
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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