STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_0976Zinc carboxypeptidase domain protein. (294 aa)    
Predicted Functional Partners:
M900_0974
PF01863 domain protein.
 
     0.803
M900_0977
Hypothetical protein; Identified by glimmer; putative.
       0.773
M900_0975
Hypothetical protein; Identified by glimmer; putative.
       0.768
EQC44292.1
Aminotransferase, class III.
    
 0.712
M900_1108
Proline dehydrogenase family protein.
    
  0.667
M900_1928
PF10675 family protein.
  
     0.546
M900_0973
Hypothetical protein.
       0.462
EQC44380.1
Endonuclease/exonuclease/phosphatase family protein.
  
     0.441
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.