STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_1039Putative kinase PrkA. (686 aa)    
Predicted Functional Partners:
M900_1040
PF04285 domain protein; Belongs to the UPF0229 family.
  
 0.988
M900_1041
SpoVR family protein.
 
  
 0.987
M900_2224
Oxidoreductase, aldo/keto reductase family protein.
   
    0.649
M900_1388
Ferritin-like protein; Belongs to the Dps family.
   
    0.589
EQC47716.1
Catalase domain protein.
   
  
 0.545
M900_2494
PhoH family protein.
   
  
 0.534
ldh
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.526
M900_1043
Sigma factor regulatory protein, FecR/PupR family.
       0.496
M900_1038
Stage II sporulation protein E.
       0.477
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.