STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_1201Cyclic nucleotide-binding domain protein. (218 aa)    
Predicted Functional Partners:
M900_1719
PAS domain S-box protein.
   
 0.886
M900_1001
Response regulator receiver domain protein.
   
 0.850
EQC47888.1
GHKL domain protein.
   
 0.850
EQC47998.1
Hypothetical protein; Identified by glimmer; putative.
   
 0.839
M900_0979
CHASE2 domain protein.
 
 
 0.792
M900_1706
CHASE2 domain protein.
 
 
 0.789
M900_1108
Proline dehydrogenase family protein.
     
 0.719
carB
Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
    
  0.710
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.680
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.676
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.