STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_1314Alpha amylase, catalytic domain protein. (464 aa)    
Predicted Functional Partners:
M900_1310
PF11852 domain protein; Belongs to the glycosyl hydrolase 13 family.
 
 0.999
M900_1311
ABC transporter, solute-binding protein.
 
  
 0.986
M900_1362
Amino acid permease.
    
 0.982
M900_1309
4-alpha-glucanotransferase.
  
 
 0.941
M900_1315
ROK family protein.
 
  
 0.938
M900_1313
TOBE domain protein; Belongs to the ABC transporter superfamily.
  
  
 0.891
M900_1312
ABC transporter, permease protein.
  
  
 0.882
M900_1307
LamB porin.
 
  
 0.726
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.720
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.672
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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