STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_1655PDZ domain-like peptide-binding superfamily. (503 aa)    
Predicted Functional Partners:
gspD
Type II secretion system protein D.
 
 
 0.997
M900_0243
Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
 
 0.968
M900_0652
Hypothetical protein.
  
 
 0.890
M900_2406
Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
  
 
 0.890
gspG
Type II secretion system protein G.
 
  
 0.792
gspF
Type II secretion system protein F.
  
  
 0.772
M900_1657
Putative type II secretion system protein E.
  
  
 0.762
M900_1663
Hypothetical protein.
  
  
 0.736
M900_1664
Hypothetical protein.
 
   
 0.736
M900_1661
Prepilin-type cleavage/methylation N-terminal domain protein; Overlaps another CDS with the same product name.
  
  
 0.735
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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