M900_1717 protein (Bacteriovorax sp. Seq25V)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M900_1717

Putative 8-amino-7-oxononanoate synthase. (402 aa)

Predicted Functional Partners:

M900_1718

0.965

EQC47752.1

0.944

EQC44292.1

0.944

EQC44317.1

0.909

M900_1720

0.899

EQC47998.1

0.868

EQC44288.1

0.866

M900_1001

0.864

M900_1719

0.864

EQC47888.1

0.864

Your Current Organism:

Bacteriovorax sp. Seq25V

NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EQC44288.1	EQC44292.1	M900_A0423	M900_A0288	Glycine dehydrogenase (decarboxylating).	Aminotransferase, class III.	0.872
EQC44288.1	EQC44317.1	M900_A0423	M900_A0286	Glycine dehydrogenase (decarboxylating).	Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.802
EQC44288.1	EQC47888.1	M900_A0423	M900_A0027	Glycine dehydrogenase (decarboxylating).	GHKL domain protein.	0.505
EQC44288.1	EQC47998.1	M900_A0423	M900_A0060	Glycine dehydrogenase (decarboxylating).	Hypothetical protein; Identified by glimmer; putative.	0.504
EQC44288.1	M900_1001	M900_A0423	M900_1001	Glycine dehydrogenase (decarboxylating).	Response regulator receiver domain protein.	0.506
EQC44288.1	M900_1717	M900_A0423	M900_1717	Glycine dehydrogenase (decarboxylating).	Putative 8-amino-7-oxononanoate synthase.	0.866
EQC44288.1	M900_1719	M900_A0423	M900_1719	Glycine dehydrogenase (decarboxylating).	PAS domain S-box protein.	0.505
EQC44292.1	EQC44288.1	M900_A0288	M900_A0423	Aminotransferase, class III.	Glycine dehydrogenase (decarboxylating).	0.872
EQC44292.1	EQC44317.1	M900_A0288	M900_A0286	Aminotransferase, class III.	Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.964
EQC44292.1	EQC47752.1	M900_A0288	M900_A0218	Aminotransferase, class III.	AMP-binding enzyme.	0.547
EQC44292.1	M900_1717	M900_A0288	M900_1717	Aminotransferase, class III.	Putative 8-amino-7-oxononanoate synthase.	0.944
EQC44292.1	M900_1718	M900_A0288	M900_1718	Aminotransferase, class III.	Hypothetical protein.	0.692
EQC44292.1	M900_1719	M900_A0288	M900_1719	Aminotransferase, class III.	PAS domain S-box protein.	0.499
EQC44317.1	EQC44288.1	M900_A0286	M900_A0423	Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glycine dehydrogenase (decarboxylating).	0.802
EQC44317.1	EQC44292.1	M900_A0286	M900_A0288	Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aminotransferase, class III.	0.964
EQC44317.1	M900_1717	M900_A0286	M900_1717	Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Putative 8-amino-7-oxononanoate synthase.	0.909
EQC47752.1	EQC44292.1	M900_A0218	M900_A0288	AMP-binding enzyme.	Aminotransferase, class III.	0.547
EQC47752.1	EQC47888.1	M900_A0218	M900_A0027	AMP-binding enzyme.	GHKL domain protein.	0.724
EQC47752.1	EQC47998.1	M900_A0218	M900_A0060	AMP-binding enzyme.	Hypothetical protein; Identified by glimmer; putative.	0.718
EQC47752.1	M900_1001	M900_A0218	M900_1001	AMP-binding enzyme.	Response regulator receiver domain protein.	0.727