STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_1980Stage II sporulation protein E. (567 aa)    
Predicted Functional Partners:
EQC47998.1
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.986
M900_1001
Response regulator receiver domain protein.
  
 
 0.979
M900_1982
Hypothetical protein.
  
 0.971
M900_1719
PAS domain S-box protein.
 
 
 0.962
EQC47888.1
GHKL domain protein.
  
 
 0.954
EQC44318.1
STAS domain protein.
  
 0.952
EQC44356.1
GHKL domain protein.
 
 
 0.931
M900_0911
GHKL domain protein.
 
 
 0.881
M900_0713
PAS domain S-box protein.
 
 0.847
M900_1981
GHKL domain protein.
      0.843
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.