STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raiA-2Ribosomal subunit interface protein. (125 aa)    
Predicted Functional Partners:
M900_2083
Ribosomal protein S6/ribosomal protein S18 multi-domain protein; Belongs to the bacterial ribosomal protein bS18 family.
  
 
   0.874
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.872
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.868
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.868
rpmA
Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.867
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.864
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.863
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.862
rpmH
Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.862
rplY
Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.860
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.