Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
M900_2327 | argS | M900_2327 | M900_1676 | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | arginine--tRNA ligase. | 0.936 |
M900_2327 | asnS | M900_2327 | M900_A0428 | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | asparagine--tRNA ligase. | 0.912 |
M900_2327 | gltX | M900_2327 | M900_1365 | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.922 |
M900_2327 | ileS | M900_2327 | M900_0801 | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. | 0.933 |
M900_2327 | leuS | M900_2327 | M900_2248 | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.952 |
M900_2327 | metC | M900_2327 | M900_0568 | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | Cystathionine beta-lyase. | 0.750 |
M900_2327 | metH | M900_2327 | M900_0374 | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.764 |
M900_2327 | pheT | M900_2327 | M900_1081 | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.884 |
M900_2327 | proS | M900_2327 | M900_1400 | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). | 0.883 |
M900_2327 | tyrS | M900_2327 | M900_1364 | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.719 |
argS | M900_2327 | M900_1676 | M900_2327 | arginine--tRNA ligase. | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.936 |
argS | asnS | M900_1676 | M900_A0428 | arginine--tRNA ligase. | asparagine--tRNA ligase. | 0.920 |
argS | gltX | M900_1676 | M900_1365 | arginine--tRNA ligase. | glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.965 |
argS | ileS | M900_1676 | M900_0801 | arginine--tRNA ligase. | isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. | 0.988 |
argS | leuS | M900_1676 | M900_2248 | arginine--tRNA ligase. | leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.929 |
argS | pheT | M900_1676 | M900_1081 | arginine--tRNA ligase. | phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.855 |
argS | proS | M900_1676 | M900_1400 | arginine--tRNA ligase. | proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). | 0.966 |
argS | tyrS | M900_1676 | M900_1364 | arginine--tRNA ligase. | tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.787 |
asnS | M900_2327 | M900_A0428 | M900_2327 | asparagine--tRNA ligase. | tRNA ligases class I domain protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.912 |
asnS | argS | M900_A0428 | M900_1676 | asparagine--tRNA ligase. | arginine--tRNA ligase. | 0.920 |
page 1 of 5