STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_2476Geranylgeranyl reductase family. (389 aa)    
Predicted Functional Partners:
etfB
Electron transfer flavoprotein domain protein.
  
 
 0.916
M900_2478
Synthase, chalcone/stilbene, C-terminal domain protein.
 
  
 0.888
M900_2782
Putative electron transfer flavoprotein, alpha subunit.
  
 
 0.850
M900_2477
Hypothetical protein.
       0.773
M900_2475
YceI-like domain protein.
       0.746
M900_1668
Geranyltranstransferase domain protein; Belongs to the FPP/GGPP synthase family.
  
 0.741
M900_0270
Rieske [2Fe-2S] domain protein.
  
 
 0.659
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
    
 0.631
M900_2575
Radical SAM domain protein.
 
  
 0.627
M900_1820
NAD(P)-binding Rossmann-like domain protein.
  
 
 0.608
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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