M900_2732 protein (Bacteriovorax sp. Seq25V)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M900_2732

Penicillin-binding protein, 1A family. (912 aa)

Predicted Functional Partners:

M900_2733

0.773

xseB

0.773

mrdA

0.725

M900_2795

0.723

M900_0135

0.715

EQC48006.1

0.696

M900_1037

0.690

M900_1497

0.684

EQC44228.1

0.679

M900_0174

0.603

Your Current Organism:

Bacteriovorax sp. Seq25V

NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EQC44228.1	EQC48006.1	M900_A0281	M900_A0079	Peptidase, M23 family.	Transglycosylase.	0.703
EQC44228.1	M900_2732	M900_A0281	M900_2732	Peptidase, M23 family.	Penicillin-binding protein, 1A family.	0.679
EQC44228.1	M900_2795	M900_A0281	M900_2795	Peptidase, M23 family.	Transglycosylase.	0.668
EQC48006.1	EQC44228.1	M900_A0079	M900_A0281	Transglycosylase.	Peptidase, M23 family.	0.703
EQC48006.1	M900_0135	M900_A0079	M900_0135	Transglycosylase.	Penicillin-binding protein, transpeptidase domain protein.	0.916
EQC48006.1	M900_0174	M900_A0079	M900_0174	Transglycosylase.	Penicillin-binding protein, transpeptidase domain protein.	0.848
EQC48006.1	M900_1037	M900_A0079	M900_1037	Transglycosylase.	Peptidase, M23 family.	0.683
EQC48006.1	M900_1497	M900_A0079	M900_1497	Transglycosylase.	Peptidase, M23 family.	0.666
EQC48006.1	M900_2732	M900_A0079	M900_2732	Transglycosylase.	Penicillin-binding protein, 1A family.	0.696
EQC48006.1	M900_2795	M900_A0079	M900_2795	Transglycosylase.	Transglycosylase.	0.700
EQC48006.1	mrdA	M900_A0079	M900_2308	Transglycosylase.	Penicillin-binding protein 2.	0.890
M900_0135	EQC48006.1	M900_0135	M900_A0079	Penicillin-binding protein, transpeptidase domain protein.	Transglycosylase.	0.916
M900_0135	M900_0174	M900_0135	M900_0174	Penicillin-binding protein, transpeptidase domain protein.	Penicillin-binding protein, transpeptidase domain protein.	0.807
M900_0135	M900_2732	M900_0135	M900_2732	Penicillin-binding protein, transpeptidase domain protein.	Penicillin-binding protein, 1A family.	0.715
M900_0135	M900_2795	M900_0135	M900_2795	Penicillin-binding protein, transpeptidase domain protein.	Transglycosylase.	0.620
M900_0135	mrdA	M900_0135	M900_2308	Penicillin-binding protein, transpeptidase domain protein.	Penicillin-binding protein 2.	0.830
M900_0174	EQC48006.1	M900_0174	M900_A0079	Penicillin-binding protein, transpeptidase domain protein.	Transglycosylase.	0.848
M900_0174	M900_0135	M900_0174	M900_0135	Penicillin-binding protein, transpeptidase domain protein.	Penicillin-binding protein, transpeptidase domain protein.	0.807
M900_0174	M900_1037	M900_0174	M900_1037	Penicillin-binding protein, transpeptidase domain protein.	Peptidase, M23 family.	0.402
M900_0174	M900_2732	M900_0174	M900_2732	Penicillin-binding protein, transpeptidase domain protein.	Penicillin-binding protein, 1A family.	0.603