STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M900_2755Putative succinylglutamate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (504 aa)    
Predicted Functional Partners:
astA
Arginine N-succinyltransferase, alpha or beta subunit.
  
 0.897
M900_0628
Putative phosphate acetyltransferase.
  
 
 0.896
M900_2752
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.892
astE
Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.
 
 
 0.888
M900_1108
Proline dehydrogenase family protein.
 
0.877
EQC44292.1
Aminotransferase, class III.
 
 0.865
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.834
EQC44288.1
Glycine dehydrogenase (decarboxylating).
     
 0.822
M900_1146
2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit.
    
 0.820
EQC47748.1
GH3 auxin-responsive promoter.
   
 0.809
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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