STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icmFmethylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly. (1050 aa)    
Predicted Functional Partners:
M900_2652
methylmalonyl-CoA mutase.
 
0.999
EQC48082.1
Putative 4-hydroxybutyrate coenzyme A transferase.
  
 
 0.950
M900_2654
LAO/AO transport system ATPase.
 
  
0.902
M900_1094
CoA-transferase family III protein; Belongs to the CoA-transferase III family.
 
  
 0.888
M900_1146
2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit.
  
 
 0.880
M900_2764
4Fe-4S dicluster domain protein.
    
  0.866
hppD
4-hydroxyphenylpyruvate dioxygenase.
    
 0.864
sucD
succinate-CoA ligase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
    
 0.864
EQC44405.1
Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase.
    
 0.863
M900_1608
Glyoxalase-like domain protein.
    
 0.861
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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