STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQC47895.1ABC-2 type transporter. (216 aa)    
Predicted Functional Partners:
EQC47899.1
ABC transporter, ATP-binding protein.
 
 0.999
EQC47906.1
Hypothetical protein.
       0.773
EQC47891.1
Glycosyltransferase, group 1 family protein.
 
  
 0.731
M900_0066
O-antigen ligase.
 
  
 0.680
M900_1849
Glycosyltransferase, group 2 family protein.
 
  
 0.660
M900_0042
Glycosyltransferase, group 2 family protein.
  
  
 0.633
M900_2572
Glycosyltransferase, group 2 family protein.
 
  
 0.620
EQC47905.1
Hypothetical protein; Identified by glimmer; putative.
       0.572
EQC47901.1
Hypothetical protein; Identified by glimmer; putative.
       0.572
EQC47732.1
Ribonucleoside-diphosphate reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
   
    0.536
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.