STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQC47735.1PAP2 family protein. (383 aa)    
Predicted Functional Partners:
EQC47748.1
GH3 auxin-responsive promoter.
 
     0.805
EQC44405.1
Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase.
    
 0.718
M900_1394
Unspecific monooxygenase; Belongs to the cytochrome P450 family.
   
  0.619
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.610
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.594
M900_1722
Fatty acid hydroxylase family protein.
  
 
  0.544
M900_1682
Fatty acid hydroxylase family protein.
    
  0.476
EQC47978.1
Fatty acid hydroxylase family protein.
    
  0.476
fadD
long-chain-fatty-acid--CoA ligase.
    
  0.474
fadD-2
long-chain-fatty-acid--CoA ligase.
    
  0.474
Your Current Organism:
Bacteriovorax sp. Seq25V
NCBI taxonomy Id: 1201288
Other names: B. sp. Seq25_V, Bacteriovorax sp. Seq25_V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.