STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN140_1274Chromosome partitioning ATPase; Cobyrinic acid a,c-diamide synthase, YhjQ protein; Specificity unclear. (291 aa)    
Predicted Functional Partners:
BN140_0275
IMP dehydrogenase; PRC-barrel domain; High confidence in function and specificity.
  
 
 0.978
cheW
CheW-like protein; Conserved hypothetical protein.
  
 
 0.842
BN140_1275
Chemotaxis methyl-accepting receptor, signalling, PAS fold; High confidence in function and specificity.
  
  
 0.815
cheR
MCP methyltransferase, CheR-type, CheR methyltransferase, SAM binding domain; High confidence in function and specificity.
  
  
 0.743
BN140_1951
Biotin-acetyl-CoA-carboxylase ligase, Biotin/lipoate A/B protein ligase family; High confidence in function and specificity.
     
 0.707
BN140_0778
Protein phosphatase 2C-like, Protein phosphatase 2C; High confidence in function and specificity.
 
  
 0.619
ftsZ-2
Cell division protein ftsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
 
  
 0.618
int
Phage integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Belongs to the 'phage' integrase family. XerA subfamily.
 
   
 0.611
minD1
ATPase, cell division-type, MinD, ParA/MinD ATPase like; High confidence in function and specificity.
 
  
 0.593
srp54
Signal recognition 54 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
  
  
 0.576
Your Current Organism:
Methanoculleus bourgensis
NCBI taxonomy Id: 1201294
Other names: M. bourgensis MS2, Methanoculleus bourgensis DSM 3045, Methanoculleus bourgensis MS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.