STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW11320.1DNA polymerase. (198 aa)    
Predicted Functional Partners:
SEW26755.1
uracil-DNA glycosylase, family 4.
  
  
 
0.775
SEV96243.1
uracil-DNA glycosylase, family 4; Manually curated.
  
  
 
0.762
SEW11315.1
Hypothetical protein; Belongs to the UPF0215 family.
       0.640
SEW11301.1
Hypothetical protein.
       0.591
hisH
Imidazole glycerol phosphate synthase subunit hisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
       0.531
SEW11331.1
Hypothetical protein.
       0.518
SEW11296.1
Glyoxylase, beta-lactamase superfamily II.
       0.480
Your Current Organism:
Halopiger salifodinae
NCBI taxonomy Id: 1202768
Other names: CGMCC 1.12284, H. salifodinae, Halopiger salifodinae Zhang et al. 2013, Halopiger sp. kcy07-b2, JCM 18547, strain KCY07-B2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.