STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000312405_00767Unannotated protein. (351 aa)    
Predicted Functional Partners:
GCA_000312405_00764
Unannotated protein.
 
 
 0.977
GCA_000312405_00763
Unannotated protein.
 
  
 0.968
GCA_000312405_00765
Unannotated protein.
 
    0.963
GCA_000312405_00762
Unannotated protein.
 
   
 0.957
GCA_000312405_00766
Unannotated protein.
 
  
 0.956
IV41_GL001295
Unannotated protein.
 
 
 0.628
IV41_GL000334
Unannotated protein.
    
  0.472
ffh
Unannotated protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
       0.463
IV41_GL001127
Unannotated protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
       0.463
IV41_GL001797
Unannotated protein; Belongs to the glycosyl hydrolase 3 family.
    
 0.437
Your Current Organism:
Lactobacillus ingluviei
NCBI taxonomy Id: 1203076
Other names: L. ingluviei str. Autruche 4, Lactobacillus ingluviei Autruche 4, Lactobacillus ingluviei str. Autruche 4, Lactobacillus ingluviei strain Autruche 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.