STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
miaBUnannotated protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (514 aa)    
Predicted Functional Partners:
miaA
Unannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
 0.973
GCA_000312345_01236
Unannotated protein; Belongs to the LOG family.
      
 0.867
GCA_000312345_02095
Unannotated protein; Belongs to the Nudix hydrolase family.
      
 0.867
rph
Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
   0.819
rlmN
Unannotated protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
  
 0.724
GCA_000312345_00063
Unannotated protein.
   
   0.691
GCA_000312345_00061
Unannotated protein.
       0.689
GCA_000312345_01766
Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.610
GCA_000312345_00137
Unannotated protein; Belongs to the peptidase S26 family.
  
    0.605
GCA_000312345_00064
Unannotated protein.
       0.589
Your Current Organism:
Corynebacterium timonense
NCBI taxonomy Id: 1203190
Other names: C. timonense 5401744, Corynebacterium timonense 5401744, Corynebacterium timonense str. 5401744, Corynebacterium timonense strain 5401744
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.