Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ERS44059.1 | ERS44063.1 | HMPREF1287_00539 | HMPREF1287_00543 | Hypothetical protein. | Proteasome accessory factor PafA2. | 0.743 |
ERS44059.1 | ERS44065.1 | HMPREF1287_00539 | HMPREF1287_00545 | Hypothetical protein. | Hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | 0.639 |
ERS44059.1 | ERS44066.1 | HMPREF1287_00539 | HMPREF1287_00546 | Hypothetical protein. | Hypothetical protein. | 0.614 |
ERS44059.1 | ERS44067.1 | HMPREF1287_00539 | HMPREF1287_00547 | Hypothetical protein. | Hypothetical protein. | 0.562 |
ERS44059.1 | arc | HMPREF1287_00539 | HMPREF1287_00544 | Hypothetical protein. | AAA ATPase forming ring-shaped complexes. | 0.789 |
ERS44059.1 | pafA | HMPREF1287_00539 | HMPREF1287_00541 | Hypothetical protein. | Pup-protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.853 |
ERS44059.1 | pup | HMPREF1287_00539 | HMPREF1287_00542 | Hypothetical protein. | Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. | 0.787 |
ERS44059.1 | tatA | HMPREF1287_00539 | HMPREF1287_00538 | Hypothetical protein. | Hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.692 |
ERS44063.1 | ERS44059.1 | HMPREF1287_00543 | HMPREF1287_00539 | Proteasome accessory factor PafA2. | Hypothetical protein. | 0.743 |
ERS44063.1 | ERS44065.1 | HMPREF1287_00543 | HMPREF1287_00545 | Proteasome accessory factor PafA2. | Hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | 0.800 |
ERS44063.1 | ERS44066.1 | HMPREF1287_00543 | HMPREF1287_00546 | Proteasome accessory factor PafA2. | Hypothetical protein. | 0.683 |
ERS44063.1 | ERS44067.1 | HMPREF1287_00543 | HMPREF1287_00547 | Proteasome accessory factor PafA2. | Hypothetical protein. | 0.762 |
ERS44063.1 | arc | HMPREF1287_00543 | HMPREF1287_00544 | Proteasome accessory factor PafA2. | AAA ATPase forming ring-shaped complexes. | 0.973 |
ERS44063.1 | pafA | HMPREF1287_00543 | HMPREF1287_00541 | Proteasome accessory factor PafA2. | Pup-protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.841 |
ERS44063.1 | pup | HMPREF1287_00543 | HMPREF1287_00542 | Proteasome accessory factor PafA2. | Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. | 0.934 |
ERS44063.1 | tatA | HMPREF1287_00543 | HMPREF1287_00538 | Proteasome accessory factor PafA2. | Hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.621 |
ERS44063.1 | whiB-2 | HMPREF1287_00543 | HMPREF1287_02232 | Proteasome accessory factor PafA2. | Hypothetical protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.402 |
ERS44065.1 | ERS44059.1 | HMPREF1287_00545 | HMPREF1287_00539 | Hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | Hypothetical protein. | 0.639 |
ERS44065.1 | ERS44063.1 | HMPREF1287_00545 | HMPREF1287_00543 | Hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | Proteasome accessory factor PafA2. | 0.800 |
ERS44065.1 | ERS44066.1 | HMPREF1287_00545 | HMPREF1287_00546 | Hypothetical protein; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | Hypothetical protein. | 0.802 |
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