STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0105yacP-like NYN domain protein. (458 aa)    
Predicted Functional Partners:
B005_0104
Hypothetical protein.
       0.808
B005_1494
Helix-turn-helix family protein.
  
     0.764
B005_0811
Helix-turn-helix family protein.
  
     0.761
B005_3700
Hypothetical protein.
  
     0.756
B005_0316
Helix-turn-helix family protein.
  
     0.754
B005_2181
Helix-turn-helix family protein.
  
     0.748
B005_3387
Helix-turn-helix family protein.
  
     0.748
B005_3389
Hypothetical protein.
  
     0.745
B005_3699
Putative dNA-binding protein.
  
     0.744
B005_1304
Helix-turn-helix domain protein.
  
     0.742
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.