STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0149D-alanyl-D-alanine carboxypeptidase family protein. (206 aa)    
Predicted Functional Partners:
B005_0147
HAMP domain protein.
 
     0.802
B005_0148
Two-component system, regulatory protein.
 
   
 0.642
B005_2479
marR family protein.
  
     0.515
B005_1394
ribD C-terminal domain protein.
  
     0.485
B005_4808
RNA polymerase, sigma-24 subunit, ECF subfamily domain protein.
 
     0.425
B005_2842
Peptidase M23 family protein.
 
  
 0.421
B005_2931
Hypothetical protein.
  
    0.411
B005_4677
Bacterial regulatory s, lacI family protein.
  
     0.407
B005_0159
Bacterial regulatory s, luxR family protein.
  
     0.400
B005_0440
Bacterial regulatory s, tetR family protein.
  
     0.400
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.