STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0156Putative transcriptional regulator, TetR family protein. (201 aa)    
Predicted Functional Partners:
B005_0157
ribD C-terminal domain protein.
 
     0.840
B005_0451
ribD C-terminal domain protein.
 
     0.694
B005_4475
NB-ARC domain protein.
  
    0.685
B005_4336
Tetratricopeptide repeat family protein.
  
     0.622
B005_4990
TPR repeat family protein.
  
    0.618
B005_1937
Hypothetical protein.
   
    0.527
B005_2975
Hypothetical protein.
  
     0.526
B005_5379
Fibronectin-binding family protein.
  
    0.513
B005_4334
Hypothetical protein.
  
     0.510
B005_4476
Putative translation initiation factor IF-2.
  
     0.504
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.