STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_0182Carbamoyl-phosphate synthase L chain, ATP binding domain protein. (698 aa)    
Predicted Functional Partners:
B005_1109
Putative propionyl-CoA carboxylase beta chain 5.
 
 0.986
B005_0183
Carboxyl transferase domain protein.
 0.969
mce
methylmalonyl-CoA epimerase.
  
 
 0.931
B005_5380
beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.924
accA1
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
  
  
 
0.914
B005_0692
Allophanate hydrolase subunit 2.
 
  
 0.913
B005_1111
Carbamoyl-phosphate synthase L chain, ATP binding domain protein.
  
  
 
0.913
B005_0176
Acyl-coenzyme A oxidase, peroxisomal.
  
 0.912
B005_1828
AMP-binding enzyme family protein.
  
 0.912
B005_3305
AMP-binding enzyme family protein.
  
 0.912
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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